物種親緣關係

1. Adoutte, A., Balavoine, G., Lartillot, N.,  Lespinet, O., Prud'homme, B. and Renaud, D.R. (2000) The New Animal Phylogeny 97: 4453-4456

Telford et al (2015) Current Biology 25 (19): 876-887

2. Kocot, K.M., Cannon, J.T., Todt,C., Citarella, M.R., Kohn, A.B., Meyer, A., Santos, S.R., Schander,C., Moroz, L.L., Lieb,B. and Halanych, K.M.(2011) Phylogenomics Reveals Deep Molluscan Relationships. Nature 477: 452-456

3.Santaclara, F.J., Espineira, M., Vieites, J.M. (2007) Genetic Identification of Squids (Families Ommastrephidae and Loliginidae) J. Agric. Food Chem. 55: 9913–9920

Lee, P.N., Callaerts, P., de Couet, H.G. and Martindale, M.Q.(2003) Cephalopod Hox Genes and the oOrigin of Morphological Novelties. Nature 424: 1061-1065

4. Plazzi, F., Ceregato, A., Taviani, M., Passamonti, M. (2011) A Molecular Phylogeny of Bivalve Mollusks: Ancient Radiations and Divergences as Revealed by Mitochondrial Genes. PLOS ONE 6(10): 27147

5. Shen, H. (2012) Mitogenomic Analysis of Decapod Phylogeny: 1-176

6. Voloch, C.M., Freire, P.R. and Russo, C.A.M. (2005) Molecular Phylogeny of Penaeid Shrimps Inferred from Two Mitochondrial Markers. Genetics and Molecular Research 4(4): 668-674

7. Ma, H., Ma, C., Li, C., Lu, J., Zou, X., Gong, Y., Wang, W., Chen, W., Ma, L., and Xia, L., (2015) First Mitochondrial Genome for the Red Crab (Charybdis feriata) with Implication of Phylogenomics and Population Genetics. Scientific Reports 5(10)

Stephenson, W. (1972) An annotated Check List and Key to the Indo-west-Pacific Swimming Crabs (Crustacea: Decapoda: Portunidae). B Roy Soc New Zeal 10: 1-64 

Zhang, S., Cui, Z.X., Wang, C.L., Zhang, S., Li, X.L., Cui, Z.X., Wang, H.X., Wang, C.L., Liu, X.L. (2008) The Applications of Mitochondrial DNA in Phylogeny Reconstruction and Species Identification of Portunid Crab. Marine Science 32: 9-18

8.MiyaEmail, M., Pietsch, T.W., Orr, J.W., Arnold, R.J., Satoh, T.P., Shedlock, A.M., Ho, H.C., Shimazaki, M., Yabe, M. and Nishida, M. (2010) Evolutionary History of Anglerfishes (Teleostei: Lophiiformes): A Mitogenomic Perspective. BMC Evolutionary Biology 10: 58

Inoue, J. G., Miya, M., Tsukamoto, K., Nishida, M. (2004) Mitogenomic Evidence for the Monophyly of Elopomorph Fishes (Teleostei) and the Evolutionary Origin of the Leptocephalus Larva. Molecular Phylogenetics and Evolution 32: 274-286

Betancur, R.R. and Orti, G. (2014) Molecular Evidence for the Monophyly of Flatfishes (Carangimorpharia: Pleuronectiformes). Molecular Phylogenetics and Evolution 73: 18-22.

Faircloth, B.C., Mccormack, J.E., Crawford, N.G., Harvey, M.G.,  Brumfield, R.T. and Glenn, T.C. (2012) Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales. Systematic Biology 61(5): 717-726

9.Li, C. (2007)A Genome-scale Approach to Phylogeny of Rayfinned Fish (Actinopterygii) and Molecular Systematics of Clupeiformes: 1-134

10. Coulson, M.W., Marshall, H.D., Pepin, P., Carr, S.M.. (2006) Mitochondrial Gnomics of Gadine Fishes: Implications for Taxonomy and Biogeographic Origins From Whole-genome Data Sets. Genome 49(9): 1115-1130

11. Arratia, G. et al. (2013) The Tree of Life and a New Classification of Bony Fishes. PLOS Currents Tree of Life: 1-45

12. Dickson, K.A., and Graham, J.B. (2004) Evolution and Consequences of Endothermy in Fishes. Physiol Biochem Zool 77(6): 998-1018

13.Santini, L., Carnevale, G., Santini, F. (2013) First molecular scombrid timetree (Percomorpha: Scombridae) shows recent radiation of tunas following invasion of pelagic habitat. Italian Journal of Zoology 80: 210-221

Miya, M. et al. (2013) Evolutionary Origin of the Scombridae (Tunas and Mackerels): Members of a Paleogene Adaptive Radiation with 14 Other Pelagic Fish Families. Evolutionary Origin of the Scombridae 8(9): 7353

14. Novacek, M.J. (2001) Mammalian Phylogeny: Genes and Supertrees. Current Biology 11(14): 573-575

Barker, F.K. (2004) Monophyly and Relationships of Wrens (Aves: Troglodytidae): A Congruence Analysis of Heterogeneous Mitochondrial and Nuclear DNA Sequence Data. Molecular Phylogenetics and Evolution 31: 486-504

15.Livezey, B.C. (1989) Phylogenetic Relationships of Several Subfossil Anseriformes of New Zealand. Occasional Papers of the Museum of Natural History of the University of Kansas. 128: 1-25

Tuinen, M., Dyke, G.J. (2004) Calibration of Galliform Molecular Clocks Using Multiple Fossils and Genetic Partitions. Molecular Phylogenetics and Evolution 30(1): 74-86

16. Georgiadis, N.J., Kat, P.W., Oketch, H. and Patton, J. (1991) Allozyme Divergence within the Bovidae. Evolution 44: 2135-2149

Hardjasasmita, H.S. (1987)  Taxonomy and Phylogeny of the Suidae (Mammalia) in Indonesia. Scripta Geol 85: 1-68